IL_4UJD_009

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAACU*GAGAGUUCAAGAGGGC

Length

21 nucleotides

Bulged bases

4UJD|1|A2|G|400, 4UJD|1|A2|G|404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|378
4UJD|1|A2|A|379
4UJD|1|A2|A|380
4UJD|1|A2|C|381
4UJD|1|A2|U|382
*
4UJD|1|A2|G|390
4UJD|1|A2|A|391
4UJD|1|A2|G|392
4UJD|1|A2|A|393
4UJD|1|A2|G|394
4UJD|1|A2|U|395
4UJD|1|A2|U|396
4UJD|1|A2|C|397
4UJD|1|A2|A|398
4UJD|1|A2|A|399
4UJD|1|A2|G|400
4UJD|1|A2|A|401
4UJD|1|A2|G|402
4UJD|1|A2|G|403
4UJD|1|A2|G|404
4UJD|1|A2|C|405

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain AY

60S RIBOSOMAL PROTEIN L26

Chain Al

60S RIBOSOMAL PROTEIN L39