IL_4UJD_011

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUGAAAC*GUGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_011 not in the Motif Atlas

Homologous match to IL_5TBW_015

Geometric discrepancy: 0.1791

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|G|406
4UJD|1|A2|U|407
4UJD|1|A2|G|408
4UJD|1|A2|A|409
4UJD|1|A2|A|410
4UJD|1|A2|A|411
4UJD|1|A2|C|412
*
4UJD|1|A3|G|13
4UJD|1|A3|U|14
4UJD|1|A3|G|15
4UJD|1|A3|G|16
4UJD|1|A3|A|17
4UJD|1|A3|U|18
4UJD|1|A3|C|19

Current chains

Chain A2

28S Ribosomal RNA

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain Ae

60S RIBOSOMAL PROTEIN L32