IL_4UJD_023

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAAGGCC*GCAGCAGCAC

Length

18 nucleotides

Bulged bases

4UJD|1|A2|C|912

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|718
4UJD|1|A2|G|719
4UJD|1|A2|A|720
4UJD|1|A2|A|721
4UJD|1|A2|G|722
4UJD|1|A2|G|723
4UJD|1|A2|C|724
4UJD|1|A2|C|725
*
4UJD|1|A2|G|911
4UJD|1|A2|C|912
4UJD|1|A2|A|913
4UJD|1|A2|G|914
4UJD|1|A2|C|915
4UJD|1|A2|A|916
4UJD|1|A2|G|917
4UJD|1|A2|C|918
4UJD|1|A2|A|919
4UJD|1|A2|C|920

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain AM

60S RIBOSOMAL PROTEIN L14

Chain AS

60S RIBOSOMAL PROTEIN L18A