IL_4UJD_044

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_044 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1698

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4UJD|1|A2|G|1565
4UJD|1|A2|G|1566
4UJD|1|A2|U|1567
4UJD|1|A2|C|1568
*
4UJD|1|A2|G|1584
4UJD|1|A2|U|1585
4UJD|1|A2|C|1586

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Aj

60S RIBOSOMAL PROTEIN L37