IL_4UJD_047

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_047 not in the Motif Atlas

Homologous match to IL_5TBW_034

Geometric discrepancy: 0.1721

The information below is about IL_5TBW_034

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4UJD|1|A2|U|1650
4UJD|1|A2|U|1651
4UJD|1|A2|U|1652
*
4UJD|1|A2|A|1661
4UJD|1|A2|U|1662
4UJD|1|A2|A|1663

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AQ

60S RIBOSOMAL PROTEIN L18

Chain AT

60S RIBOSOMAL PROTEIN L21

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ab

60S RIBOSOMAL PROTEIN L29