IL_4UJD_052

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_052 not in the Motif Atlas

Homologous match to IL_5TBW_039

Geometric discrepancy: 0.1977

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4UJD|1|A2|A|1716
4UJD|1|A2|A|1717
*
4UJD|1|A2|U|1769
4UJD|1|A2|U|1770
4UJD|1|A2|U|1771

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain AT

60S RIBOSOMAL PROTEIN L21