IL_4UJD_061
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_061 not in the Motif Atlas
- Geometric match to IL_5Y85_006
- Geometric discrepancy: 0.2517
- The information below is about IL_5Y85_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
4UJD|1|A2|C|1889
4UJD|1|A2|G|1890
4UJD|1|A2|C|1891
4UJD|1|A2|C|1892
4UJD|1|A2|C|1893
4UJD|1|A2|G|1894
4UJD|1|A2|A|1895
4UJD|1|A2|U|1896
4UJD|1|A2|G|1897
4UJD|1|A2|C|1898
*
4UJD|1|A2|G|2041
4UJD|1|A2|G|2042
4UJD|1|A2|G|2043
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain AO
- 60S RIBOSOMAL PROTEIN L13A
- Chain AS
- 60S RIBOSOMAL PROTEIN L18A
- Chain Af
- 60S RIBOSOMAL PROTEIN L35A
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