IL_4UJD_065

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|U|1925

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_065 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.2657

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4UJD|1|A2|G|1924
4UJD|1|A2|U|1925
4UJD|1|A2|G|1926
*
4UJD|1|A2|C|2013
4UJD|1|A2|C|2014

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain AS

60S RIBOSOMAL PROTEIN L18A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40