IL_4UJD_069

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCCUUGAAGC*GUGGAGGC

Length

18 nucleotides

Bulged bases

4UJD|1|A2|U|2281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|2277
4UJD|1|A2|C|2278
4UJD|1|A2|C|2279
4UJD|1|A2|U|2280
4UJD|1|A2|U|2281
4UJD|1|A2|G|2282
4UJD|1|A2|A|2283
4UJD|1|A2|A|2284
4UJD|1|A2|G|2285
4UJD|1|A2|C|2286
*
4UJD|1|A2|G|2304
4UJD|1|A2|U|2305
4UJD|1|A2|G|2306
4UJD|1|A2|G|2307
4UJD|1|A2|A|2308
4UJD|1|A2|G|2309
4UJD|1|A2|G|2310
4UJD|1|A2|C|2311

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AY

60S RIBOSOMAL PROTEIN L26

Chain Ae

60S RIBOSOMAL PROTEIN L32

Chain At

60S RIBOSOMAL PROTEIN L28