IL_4UJD_093

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

4UJD|1|A2|C|3670

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_093 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1876

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4UJD|1|A2|C|3669
4UJD|1|A2|C|3670
4UJD|1|A2|A|3671
4UJD|1|A2|G|3672
*
4UJD|1|A2|C|3718
4UJD|1|A2|G|3719

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain C1

Small subunit ribosomal RNA; SSU rRNA