IL_4UJD_099

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_099 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1692

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4UJD|1|A2|G|3749
4UJD|1|A2|C|3750
*
4UJD|1|A2|G|3780
4UJD|1|A2|C|3781
4UJD|1|A2|A|3782
4UJD|1|A2|U|3783

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain An

60S RIBOSOMAL PROTEIN L41

Chain BA

Transfer RNA; tRNA

Chain BB

EIF5B