IL_4UJD_106

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUGA*UGAUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|3917
4UJD|1|A2|A|3918
4UJD|1|A2|U|3919
4UJD|1|A2|G|3920
4UJD|1|A2|A|3921
*
4UJD|1|A2|U|4028
4UJD|1|A2|G|4029
4UJD|1|A2|A|4030
4UJD|1|A2|U|4031
4UJD|1|A2|C|4032
4UJD|1|A2|G|4033

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Ai

60S RIBOSOMAL PROTEIN L36

Chain Au

60S RIBOSOMAL PROTEIN L10A