IL_4UJD_109

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUGAGGCGGG*CCCGCUC

Length

17 nucleotides

Bulged bases

4UJD|1|A2|G|4052, 4UJD|1|A2|G|4054, 4UJD|1|A2|G|4055, 4UJD|1|A2|C|4122, 4UJD|1|A2|U|4123

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|4050
4UJD|1|A2|U|4051
4UJD|1|A2|G|4052
4UJD|1|A2|A|4053
4UJD|1|A2|G|4054
4UJD|1|A2|G|4055
4UJD|1|A2|C|4056
4UJD|1|A2|G|4057
4UJD|1|A2|G|4058
4UJD|1|A2|G|4059
*
4UJD|1|A2|C|4118
4UJD|1|A2|C|4119
4UJD|1|A2|C|4120
4UJD|1|A2|G|4121
4UJD|1|A2|C|4122
4UJD|1|A2|U|4123
4UJD|1|A2|C|4124

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AG

60S RIBOSOMAL PROTEIN L7A

Chain AX

60S RIBOSOMAL PROTEIN L23A