IL_4UJD_116

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_116 not in the Motif Atlas

Homologous match to IL_5TBW_104

Geometric discrepancy: 0.1937

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4UJD|1|A2|U|4363
4UJD|1|A2|U|4364
4UJD|1|A2|G|4365
*
4UJD|1|A2|U|4399
4UJD|1|A2|G|4400

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain BB

EIF5B