IL_4UJD_118

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_118 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1682

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4UJD|1|A2|C|4372
4UJD|1|A2|C|4373
4UJD|1|A2|A|4374
4UJD|1|A2|A|4375
4UJD|1|A2|G|4376
*
4UJD|1|A2|C|4386
4UJD|1|A2|G|4387
4UJD|1|A2|A|4388
4UJD|1|A2|C|4389
4UJD|1|A2|G|4390

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BB

EIF5B