IL_4UJD_123

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

4UJD|1|A2|A|4448

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_123 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3883

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|U|4428
4UJD|1|A2|U|4429
4UJD|1|A2|G|4430
*
4UJD|1|A2|C|4445
4UJD|1|A2|C|4446
4UJD|1|A2|A|4447
4UJD|1|A2|A|4448
4UJD|1|A2|G|4449

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40