IL_4UJD_126

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGCCAU*AGGCGA

Length

12 nucleotides

Bulged bases

4UJD|1|A2|G|4679

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|U|4540
4UJD|1|A2|G|4541
4UJD|1|A2|C|4542
4UJD|1|A2|C|4543
4UJD|1|A2|A|4544
4UJD|1|A2|U|4545
*
4UJD|1|A2|A|4677
4UJD|1|A2|G|4678
4UJD|1|A2|G|4679
4UJD|1|A2|C|4680
4UJD|1|A2|G|4681
4UJD|1|A2|A|4682

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AO

60S RIBOSOMAL PROTEIN L13A