IL_4UJD_128

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GACAUUUG*UACCAUC

Length

15 nucleotides

Bulged bases

4UJD|1|A2|C|4630

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|4583
4UJD|1|A2|A|4584
4UJD|1|A2|C|4585
4UJD|1|A2|A|4586
4UJD|1|A2|U|4587
4UJD|1|A2|U|4588
4UJD|1|A2|U|4589
4UJD|1|A2|G|4590
*
4UJD|1|A2|U|4628
4UJD|1|A2|A|4629
4UJD|1|A2|C|4630
4UJD|1|A2|C|4631
4UJD|1|A2|A|4632
4UJD|1|A2|U|4633
4UJD|1|A2|C|4634

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AV

60S RIBOSOMAL PROTEIN L23

Chain AW

60S RIBOSOMAL PROTEIN L24