IL_4UJD_130

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUGC*GGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_130 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2213

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4UJD|1|A2|G|4597
4UJD|1|A2|U|4598
4UJD|1|A2|G|4599
4UJD|1|A2|C|4600
*
4UJD|1|A2|G|4619
4UJD|1|A2|G|4620
4UJD|1|A2|G|4621
4UJD|1|A2|C|4622

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AW

60S RIBOSOMAL PROTEIN L24

Chain Ad

60S RIBOSOMAL PROTEIN L31