IL_4UJD_131

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUU*AAUGG

Length

8 nucleotides

Bulged bases

4UJD|1|A2|A|4616, 4UJD|1|A2|U|4617

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_131 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2941

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4UJD|1|A2|C|4600
4UJD|1|A2|U|4601
4UJD|1|A2|U|4602
*
4UJD|1|A2|A|4615
4UJD|1|A2|A|4616
4UJD|1|A2|U|4617
4UJD|1|A2|G|4618
4UJD|1|A2|G|4619

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Ad

60S RIBOSOMAL PROTEIN L31