IL_4UJD_148

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|C|4968

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_148 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.3488

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4UJD|1|A2|G|4967
4UJD|1|A2|C|4968
4UJD|1|A2|A|4969
*
4UJD|1|A2|U|4990
4UJD|1|A2|C|4991

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AW

60S RIBOSOMAL PROTEIN L24