IL_4UJD_155
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUAGUAC*GGAAUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_155 not in the Motif Atlas
- Geometric match to IL_4WF9_100
- Geometric discrepancy: 0.3603
- The information below is about IL_4WF9_100
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.5
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJD|1|A4|U|72
4UJD|1|A4|U|73
4UJD|1|A4|A|74
4UJD|1|A4|G|75
4UJD|1|A4|U|76
4UJD|1|A4|A|77
4UJD|1|A4|C|78
*
4UJD|1|A4|G|98
4UJD|1|A4|G|99
4UJD|1|A4|A|100
4UJD|1|A4|A|101
4UJD|1|A4|U|102
4UJD|1|A4|A|103
Current chains
- Chain A4
- 5S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 60S RIBOSOMAL PROTEIN L5
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain AI
- 60S RIBOSOMAL PROTEIN L10
- Chain AS
- 60S RIBOSOMAL PROTEIN L18A
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
Coloring options: