IL_4UJD_176
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAUAAC*GCUAAUAC
- Length
- 14 nucleotides
- Bulged bases
- 4UJD|1|C1|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_176 not in the Motif Atlas
- Homologous match to IL_9PN5_152
- Geometric discrepancy: 0.548
- The information below is about IL_9PN5_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29461.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UJD|1|C1|G|146
4UJD|1|C1|A|147
4UJD|1|C1|U|148
4UJD|1|C1|A|149
4UJD|1|C1|A|150
4UJD|1|C1|C|151
*
4UJD|1|C1|G|167
4UJD|1|C1|C|168
4UJD|1|C1|U|169
4UJD|1|C1|A|170
4UJD|1|C1|A|171
4UJD|1|C1|U|172
4UJD|1|C1|A|173
4UJD|1|C1|C|174
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CG
- 40S RIBOSOMAL PROTEIN ES6
- Chain CY
- 40S RIBOSOMAL PROTEIN ES24
Coloring options: