IL_4UJD_185

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

4UJD|1|C1|U|488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_185 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.3228

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4UJD|1|C1|U|487
4UJD|1|C1|U|488
4UJD|1|C1|A|489
*
4UJD|1|C1|U|511
4UJD|1|C1|A|512

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BB

EIF5B

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CY

40S RIBOSOMAL PROTEIN ES24