IL_4UJD_191
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 4UJD|1|C1|G|606
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_191 not in the Motif Atlas
- Geometric match to IL_4V88_470
- Geometric discrepancy: 0.1842
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4UJD|1|C1|A|599
4UJD|1|C1|G|600
4UJD|1|C1|G|601
4UJD|1|C1|G|602
4UJD|1|C1|C|603
4UJD|1|C1|A|604
4UJD|1|C1|A|605
4UJD|1|C1|G|606
4UJD|1|C1|U|607
4UJD|1|C1|C|608
*
4UJD|1|C1|G|635
4UJD|1|C1|C|636
4UJD|1|C1|U|637
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CC
- 40S RIBOSOMAL PROTEIN US5
- Chain CJ
- 40S RIBOSOMAL PROTEIN US4
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
- Chain Ce
- 40S RIBOSOMAL PROTEIN ES30
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