IL_4UJD_202

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_202 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.2165

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

4UJD|1|C1|A|922
4UJD|1|C1|G|923
*
4UJD|1|C1|C|1019
4UJD|1|C1|A|1020
4UJD|1|C1|U|1021
4UJD|1|C1|U|1022

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CN

40S RIBOSOMAL PROTEIN ES15

Chain CW

40S RIBOSOMAL PROTEIN US8

Chain Cb

40S RIBOSOMAL PROTEIN ES27