IL_4UJD_207
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CCGCUAG*CUUGGACCGG
- Length
- 17 nucleotides
- Bulged bases
- 4UJD|1|C1|G|970
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_207 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3923
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4UJD|1|C1|C|950
4UJD|1|C1|C|951
4UJD|1|C1|G|952
4UJD|1|C1|C|953
4UJD|1|C1|U|954
4UJD|1|C1|A|955
4UJD|1|C1|G|956
*
4UJD|1|C1|C|967
4UJD|1|C1|U|968
4UJD|1|C1|U|969
4UJD|1|C1|G|970
4UJD|1|C1|G|971
4UJD|1|C1|A|972
4UJD|1|C1|C|973
4UJD|1|C1|C|974
4UJD|1|C1|G|975
4UJD|1|C1|G|976
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CB
- 40S RIBOSOMAL PROTEIN ES1
- Chain CO
- 40S RIBOSOMAL PROTEIN ES11
Coloring options: