IL_4UJD_208
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_208 not in the Motif Atlas
- Homologous match to IL_4V88_435
- Geometric discrepancy: 0.2331
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4UJD|1|C1|A|1042
4UJD|1|C1|G|1043
4UJD|1|C1|G|1044
4UJD|1|C1|U|1045
4UJD|1|C1|U|1046
4UJD|1|C1|C|1047
*
4UJD|1|C1|G|1071
4UJD|1|C1|U|1072
4UJD|1|C1|U|1073
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain Ap
- 60S RIBOSOMAL PROTEIN L37A
- Chain CO
- 40S RIBOSOMAL PROTEIN ES11
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