IL_4UJD_213

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

4UJD|1|C1|C|1109

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_213 not in the Motif Atlas

Homologous match to IL_4V88_439

Geometric discrepancy: 0.5708

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4UJD|1|C1|G|1108
4UJD|1|C1|C|1109
4UJD|1|C1|G|1110
*
4UJD|1|C1|C|1123
4UJD|1|C1|C|1124

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BC

Internal ribosome entry site; IRES

Chain CA

40S RIBOSOMAL PROTEIN US2

Chain CB

40S RIBOSOMAL PROTEIN ES1

Chain Cb

40S RIBOSOMAL PROTEIN ES27