IL_4UJD_219

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_219 not in the Motif Atlas

Homologous match to IL_4V88_445

Geometric discrepancy: 0.3127

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4UJD|1|C1|G|1235
4UJD|1|C1|G|1236
*
4UJD|1|C1|C|1521
4UJD|1|C1|A|1522
4UJD|1|C1|C|1523

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BA

Transfer RNA; tRNA

Chain CP

40S RIBOSOMAL PROTEIN US19

Chain CS

40S RIBOSOMAL PROTEIN US13