IL_4UJD_220
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GGCC*GUCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4UJD_220 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2031
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4UJD|1|C1|G|1269
4UJD|1|C1|G|1270
4UJD|1|C1|C|1271
4UJD|1|C1|C|1272
*
4UJD|1|C1|G|1510
4UJD|1|C1|U|1511
4UJD|1|C1|C|1512
4UJD|1|C1|C|1513
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CK
- 40S RIBOSOMAL PROTEIN ES10
- Chain CP
- 40S RIBOSOMAL PROTEIN US19
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
- Chain Cf
- 40S RIBOSOMAL PROTEIN ES31
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