IL_4UJD_228

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAU*AGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_228 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.216

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

4UJD|1|C1|C|1395
4UJD|1|C1|A|1396
4UJD|1|C1|U|1397
*
4UJD|1|C1|A|1448
4UJD|1|C1|G|1449
4UJD|1|C1|G|1450

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain CR

40S RIBOSOMAL PROTEIN ES17

Chain CU

40S RIBOSOMAL PROTEIN US10

Chain Cg

40S RIBOSOMAL PROTEIN RACK1