IL_4UJD_249
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGACCUCAGAUCAGACG*CGCCUGUCUGAGCGUCG
- Length
- 34 nucleotides
- Bulged bases
- 4UJD|1|A2|U|13, 4UJD|1|A3|C|150
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|C|3
4UJD|1|A2|G|4
4UJD|1|A2|A|5
4UJD|1|A2|C|6
4UJD|1|A2|C|7
4UJD|1|A2|U|8
4UJD|1|A2|C|9
4UJD|1|A2|A|10
4UJD|1|A2|G|11
4UJD|1|A2|A|12
4UJD|1|A2|U|13
4UJD|1|A2|C|14
4UJD|1|A2|A|15
4UJD|1|A2|G|16
4UJD|1|A2|A|17
4UJD|1|A2|C|18
4UJD|1|A2|G|19
*
4UJD|1|A3|C|138
4UJD|1|A3|G|139
4UJD|1|A3|C|140
4UJD|1|A3|C|141
4UJD|1|A3|U|142
4UJD|1|A3|G|143
4UJD|1|A3|U|144
4UJD|1|A3|C|145
4UJD|1|A3|U|146
4UJD|1|A3|G|147
4UJD|1|A3|A|148
4UJD|1|A3|G|149
4UJD|1|A3|C|150
4UJD|1|A3|G|151
4UJD|1|A3|U|152
4UJD|1|A3|C|153
4UJD|1|A3|G|154
Current chains
- Chain A2
- 28S Ribosomal RNA
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain AG
- 60S RIBOSOMAL PROTEIN L7A
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
Coloring options: