IL_4UJD_258

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGAAGGU*ACAGCCC

Length

15 nucleotides

Bulged bases

4UJD|1|A2|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|731
4UJD|1|A2|G|732
4UJD|1|A2|G|733
4UJD|1|A2|A|734
4UJD|1|A2|A|735
4UJD|1|A2|G|736
4UJD|1|A2|G|737
4UJD|1|A2|U|738
*
4UJD|1|A2|A|899
4UJD|1|A2|C|900
4UJD|1|A2|A|901
4UJD|1|A2|G|902
4UJD|1|A2|C|903
4UJD|1|A2|C|904
4UJD|1|A2|C|905

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AM

60S RIBOSOMAL PROTEIN L14

Chain AS

60S RIBOSOMAL PROTEIN L18A