IL_4UJD_260

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUC*GCCCGG

Length

9 nucleotides

Bulged bases

4UJD|1|A2|C|1194, 4UJD|1|A2|C|1195, 4UJD|1|A2|C|1196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_260 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.2907

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4UJD|1|A2|C|1062
4UJD|1|A2|U|1063
4UJD|1|A2|C|1064
*
4UJD|1|A2|G|1193
4UJD|1|A2|C|1194
4UJD|1|A2|C|1195
4UJD|1|A2|C|1196
4UJD|1|A2|G|1197
4UJD|1|A2|G|1198

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AF

60S RIBOSOMAL PROTEIN L7