IL_4UJD_265

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCGAAAG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

4UJD|1|A2|A|1629, 4UJD|1|A2|G|1633

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|1499
4UJD|1|A2|C|1500
4UJD|1|A2|G|1501
4UJD|1|A2|A|1502
4UJD|1|A2|A|1503
4UJD|1|A2|A|1504
4UJD|1|A2|G|1505
*
4UJD|1|A2|C|1627
4UJD|1|A2|U|1628
4UJD|1|A2|A|1629
4UJD|1|A2|G|1630
4UJD|1|A2|U|1631
4UJD|1|A2|A|1632
4UJD|1|A2|G|1633
4UJD|1|A2|C|1634
4UJD|1|A2|U|1635
4UJD|1|A2|G|1636

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Aj

60S RIBOSOMAL PROTEIN L37