IL_4UJD_266

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCGAAG*UGGAGGUC

Length

15 nucleotides

Bulged bases

4UJD|1|A2|G|1556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_266 not in the Motif Atlas

Geometric match to IL_8VTW_001

Geometric discrepancy: 0.3942

The information below is about IL_8VTW_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|G|1528
4UJD|1|A2|G|1529
4UJD|1|A2|C|1530
4UJD|1|A2|G|1531
4UJD|1|A2|A|1532
4UJD|1|A2|A|1533
4UJD|1|A2|G|1534
*
4UJD|1|A2|U|1551
4UJD|1|A2|G|1552
4UJD|1|A2|G|1553
4UJD|1|A2|A|1554
4UJD|1|A2|G|1555
4UJD|1|A2|G|1556
4UJD|1|A2|U|1557
4UJD|1|A2|C|1558

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Ap

60S RIBOSOMAL PROTEIN L37A