IL_4UJD_269

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGGGGCC*GAUCUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|U|1736
4UJD|1|A2|G|1737
4UJD|1|A2|G|1738
4UJD|1|A2|G|1739
4UJD|1|A2|G|1740
4UJD|1|A2|C|1741
4UJD|1|A2|C|1742
*
4UJD|1|A2|G|1748
4UJD|1|A2|A|1749
4UJD|1|A2|U|1750
4UJD|1|A2|C|1751
4UJD|1|A2|U|1752
4UJD|1|A2|C|1753
4UJD|1|A2|A|1754

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain AJ

60S RIBOSOMAL PROTEIN L11