IL_4UJD_272

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|A|2276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_272 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.4348

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4UJD|1|A2|G|2275
4UJD|1|A2|A|2276
4UJD|1|A2|G|2277
*
4UJD|1|A2|C|2311
4UJD|1|A2|C|2312

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain Ae

60S RIBOSOMAL PROTEIN L32

Chain At

60S RIBOSOMAL PROTEIN L28