IL_4UJD_277
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUGGAAUG*CGAGAGAG
- Length
- 16 nucleotides
- Bulged bases
- 4UJD|1|A2|A|2637, 4UJD|1|A2|U|2638, 4UJD|1|A2|A|2651
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|C|2632
4UJD|1|A2|U|2633
4UJD|1|A2|G|2634
4UJD|1|A2|G|2635
4UJD|1|A2|A|2636
4UJD|1|A2|A|2637
4UJD|1|A2|U|2638
4UJD|1|A2|G|2639
*
4UJD|1|A2|C|2649
4UJD|1|A2|G|2650
4UJD|1|A2|A|2651
4UJD|1|A2|G|2652
4UJD|1|A2|A|2653
4UJD|1|A2|G|2654
4UJD|1|A2|A|2655
4UJD|1|A2|G|2656
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AR
- 60S RIBOSOMAL PROTEIN L19
- Chain AZ
- 60S RIBOSOMAL PROTEIN L27
- Chain Ac
- 60S RIBOSOMAL PROTEIN L30
- Chain Ag
- 60S RIBOSOMAL PROTEIN L34
- Chain Ap
- 60S RIBOSOMAL PROTEIN L37A
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
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