IL_4UJD_279

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|U|3883

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_279 not in the Motif Atlas

Homologous match to IL_8P9A_321

Geometric discrepancy: 0.2143

The information below is about IL_8P9A_321

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4UJD|1|A2|G|3882
4UJD|1|A2|U|3883
4UJD|1|A2|U|3884
*
4UJD|1|A2|A|4348
4UJD|1|A2|C|4349

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ab

60S RIBOSOMAL PROTEIN L29