IL_4UJD_280

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4UJD|1|A2|G|4143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_280 not in the Motif Atlas

Homologous match to IL_8P9A_323

Geometric discrepancy: 0.339

The information below is about IL_8P9A_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4UJD|1|A2|U|3896
4UJD|1|A2|A|3897
4UJD|1|A2|G|3898
*
4UJD|1|A2|U|4141
4UJD|1|A2|G|4142
4UJD|1|A2|G|4143
4UJD|1|A2|G|4144

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Ao

60S RIBOSOMAL PROTEIN L36A