IL_4UJD_281

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AAGAGACAUGAG*CUGAUCGUUUUUU

Length

25 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|A|3911
4UJD|1|A2|A|3912
4UJD|1|A2|G|3913
4UJD|1|A2|A|3914
4UJD|1|A2|G|3915
4UJD|1|A2|A|3916
4UJD|1|A2|C|3917
4UJD|1|A2|A|3918
4UJD|1|A2|U|3919
4UJD|1|A2|G|3920
4UJD|1|A2|A|3921
4UJD|1|A2|G|3922
*
4UJD|1|A2|C|4027
4UJD|1|A2|U|4028
4UJD|1|A2|G|4029
4UJD|1|A2|A|4030
4UJD|1|A2|U|4031
4UJD|1|A2|C|4032
4UJD|1|A2|G|4033
4UJD|1|A2|U|4034
4UJD|1|A2|U|4035
4UJD|1|A2|U|4036
4UJD|1|A2|U|4037
4UJD|1|A2|U|4038
4UJD|1|A2|U|4039

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AG

60S RIBOSOMAL PROTEIN L7A

Chain Ai

60S RIBOSOMAL PROTEIN L36

Chain Au

60S RIBOSOMAL PROTEIN L10A