IL_4UJD_282

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGGUGUAGAAUAAG*CUACU

Length

19 nucleotides

Bulged bases

4UJD|1|A2|A|3931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|A|3923
4UJD|1|A2|G|3924
4UJD|1|A2|G|3925
4UJD|1|A2|U|3926
4UJD|1|A2|G|3927
4UJD|1|A2|U|3928
4UJD|1|A2|A|3929
4UJD|1|A2|G|3930
4UJD|1|A2|A|3931
4UJD|1|A2|A|3932
4UJD|1|A2|U|3933
4UJD|1|A2|A|3934
4UJD|1|A2|A|3935
4UJD|1|A2|G|3936
*
4UJD|1|A2|C|4022
4UJD|1|A2|U|4023
4UJD|1|A2|A|4024
4UJD|1|A2|C|4025
4UJD|1|A2|U|4026

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Au

60S RIBOSOMAL PROTEIN L10A