IL_4UJD_283

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACC

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|3938
4UJD|1|A2|G|3939
4UJD|1|A2|G|3940
4UJD|1|A2|A|3941
4UJD|1|A2|G|3942
*
4UJD|1|A2|C|4006
4UJD|1|A2|G|4007
4UJD|1|A2|C|4008
4UJD|1|A2|C|4009
4UJD|1|A2|G|4010
4UJD|1|A2|G|4011
4UJD|1|A2|U|4012
4UJD|1|A2|G|4013
4UJD|1|A2|A|4014
4UJD|1|A2|A|4015
4UJD|1|A2|A|4016
4UJD|1|A2|U|4017
4UJD|1|A2|A|4018
4UJD|1|A2|C|4019
4UJD|1|A2|C|4020

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Au

60S RIBOSOMAL PROTEIN L10A