IL_4UJD_298

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUCUUCAC*GUGUCGUGC

Length

17 nucleotides

Bulged bases

4UJD|1|BC|U|64, 4UJD|1|BC|C|65, 4UJD|1|BC|U|106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|BC|G|60
4UJD|1|BC|U|61
4UJD|1|BC|C|62
4UJD|1|BC|U|63
4UJD|1|BC|U|64
4UJD|1|BC|C|65
4UJD|1|BC|A|66
4UJD|1|BC|C|67
*
4UJD|1|BC|G|100
4UJD|1|BC|U|101
4UJD|1|BC|G|102
4UJD|1|BC|U|103
4UJD|1|BC|C|104
4UJD|1|BC|G|105
4UJD|1|BC|U|106
4UJD|1|BC|G|107
4UJD|1|BC|C|108

Current chains

Chain BC

HCV-IRES

Nearby chains

Chain CF

40S RIBOSOMAL PROTEIN US7

Chain CZ

40S RIBOSOMAL PROTEIN ES25