IL_4UJD_300

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_300 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.3957

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4UJD|1|C1|U|116
4UJD|1|C1|C|117
4UJD|1|C1|C|118
4UJD|1|C1|U|119
4UJD|1|C1|U|120
4UJD|1|C1|U|121
*
4UJD|1|C1|A|343
4UJD|1|C1|U|344
4UJD|1|C1|U|345
4UJD|1|C1|C|346
4UJD|1|C1|G|347

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CI

40S RIBOSOMAL PROTEIN ES8