IL_4UJD_310

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

4UJD|1|C1|G|1330, 4UJD|1|C1|C|1331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_310 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.3482

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4UJD|1|C1|U|1329
4UJD|1|C1|G|1330
4UJD|1|C1|C|1331
4UJD|1|C1|A|1332
*
4UJD|1|C1|U|1499
4UJD|1|C1|G|1500

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BC

Internal ribosome entry site; IRES

Chain CD

40S RIBOSOMAL PROTEIN US3

Chain CU

40S RIBOSOMAL PROTEIN US10