IL_4UJD_311

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AACUA*UUCUU

Length

10 nucleotides

Bulged bases

4UJD|1|C1|U|1442

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|A|1401
4UJD|1|C1|A|1402
4UJD|1|C1|C|1403
4UJD|1|C1|U|1404
4UJD|1|C1|A|1405
*
4UJD|1|C1|U|1441
4UJD|1|C1|U|1442
4UJD|1|C1|C|1443
4UJD|1|C1|U|1444
4UJD|1|C1|U|1445

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain CU

40S RIBOSOMAL PROTEIN US10