IL_4UJD_317

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCCC*GAGCGCU

Length

12 nucleotides

Bulged bases

4UJD|1|C1|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4UJD_317 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.3163

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4UJD|1|C1|G|1748
4UJD|1|C1|G|1749
4UJD|1|C1|C|1750
4UJD|1|C1|C|1751
4UJD|1|C1|C|1752
*
4UJD|1|C1|G|1780
4UJD|1|C1|A|1781
4UJD|1|C1|G|1782
4UJD|1|C1|C|1783
4UJD|1|C1|G|1784
4UJD|1|C1|C|1785
4UJD|1|C1|U|1786

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CG

40S RIBOSOMAL PROTEIN ES6